Textbook

Overview of Plant Respiration

Møller, I. M., and Rasmusson, A. G. (1998) The role of NADP in the mitochondrial matrix. Trends Plant Sci. 3: 21–27.

Glycolysis

Bailey-Serres, J., Fukao, T., Gibbs, D. J., Holdsworth, M. J., Lee, S. C., Licausi, F., Perata, P., Voesenek, L. A. C. J. and van Dongen, J. T. (2012) Making sense of low oxygen sensing. Trends Plant Sci. 17: 129–138.

Dennis, D. T., and Blakely, S. D. (2000) Carbohydrate metabolism. In Biochemistry & Molecular Biology of Plants, B. Buchanan, W. Gruissem, and R. Jones, eds., American Society of Plant Physiologists, Rockville, MD, pp. 630–674.

Hoefnagel, M. H. N., Atkin, O. K., and Wiskich, J. T. (1998) Interdependence between chloroplasts and mitochondria in the light and the dark. Biochim. Biophys. Acta 1366: 235–255.

Plaxton, W. C. (1996) The organization and regulation of plant glycolysis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 185–214.

Smeekens, S., Ma, J., Hanson, J., and Rolland, F. (2010) Sugar signals and molecular networks controlling plant growth. Curr. Opin. Plant Biol. 13: 274–279.

Sweetlove, L. J. and Fernie, A. R. (2013) The spatial organization of metabolism within the plant cell. Annu. Rev. Plant Biol. 64: 723–746.

The Oxidative Pentose Phosphate Pathway

Kruger, N. J., and von Schaewen, A. (2003) The oxidative pentose phosphate pathway: structure and organisation. Curr. Opin. Plant Biol. 6: 236–246.

Schürmann, P., and Buchanan, B. B. (2008) The ferredoxin/thioredoxin system of oxygenic photosynthesis. Antioxid. Redox Signal. 10: 1235–1273.

Sharples, S. C., and Fry, S. C. (2007) Radioisotope ratios discriminate between competing pathways of cell wall polysaccharide and RNA biosynthesis in living plant cells. Plant J. 52: 252–262.

The Citric Acid Cycle

Douce, R. (1985) Mitochondria in Higher Plants: Structure, Function, and Biogenesis. Academic Press, Orlando, FL.

Gunning, B. E. S., and Steer, M. W. (1996) Plant Cell Biology: Structure and Function of Plant Cells. Jones and Bartlett, Boston.

Huang, J., Struck, F., Matzinger, D. F., and Levings, C. S. (1994) Flower-enhanced expression of a nuclear-encoded mitochondrial respiratory protein is associated with changes in mitochondrion number. Plant Cell 6: 439–448.

Perkins, G., Renken, C., Martone, M. E., Young, S. J., Ellisman, M., and Frey, T. (1997) Electron tomography of neuronal mitochondria: Three-dimensional structure and organization of cristae and membrane contacts. J. Struct. Biol. 119: 260–272.

Sweetlove, L. J., Beard, K. F. M., Nunes-Nesi, A., Fernie, A. R. and Ratcliffe, R. G. (2010) Not just a circle: flux modes in the plant TCA cycle. Trends Plant Sci. 15: 462–470.

Sweetlove, L. J., Fait, A., Nunes-Nesi, A., Williams, T. and Fernie, A. R. (2007) The mitochondrion: an integration point of cellular metabolism and signalling. Crit. Rev. Plant Sci. 26: 17–43.

Mitochondrial Electron Transport and ATP Synthesis

Abrahams, J. P., Leslie, A. G. W., Lutter, R., and Walker, J. E. (1994) Structure at 2.8 Å resolution of F₁-ATPase from bovine heart mitochondria. Nature 370: 621–628.

Brand, M. D. (1994) The stoichiometry of proton pumping and ATP synthesis in mitochondria. Biochem. (Lond) 16: 20–24.

Buchanan, B. B., and Balmer, Y. (2005) Redox regulation: a broadening horizon. Annu. Rev. Plant Biol. 56: 187–220.

Douce, R. (1985) Mitochondria in Higher Plants: Structure, Function, and Biogenesis. Academic Press, Orlando, FL.

Giegé, P., Sweetlove, L. J., Cognat, V., and Leaver, C. J. (2005) Coordination of nuclear and mitochondrial genome expression during mitochondrial biogenesis in Arabidopsis. Plant Cell 17: 1497–1512.

Iwata, M., Lee, Y., Yamashita, T., Yagi, T., Iwata, S., Cameron, A. D., Mahera, M. J. (2012) The structure of the yeast NADH dehydrogenase(Ndi1) reveals overlapping binding sites for water- and lipid-soluble substrates. Proc. Natl. Acad. Sci. USA 109: 15247–15252.

Laloi, M., Klein, M., Riesmeier, J. W., Müller-Röber, B., Fleury, C., Bouillaud, F., and Ricquier, D. (1997) A plant cold-induced uncoupling protein. Nature 389: 135–136.

Leon, P., Arroyo, A., and Mackenzie, S. (1998) Nuclear control of plastid and mitochondrial development in higher plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49: 453–480.

Marienfeld, J., Unseld, M., and Brennicke, A. (1999) The mitochondrial genome of Arabidopsis is composed of both native and immigrant information. Trends Plant Sci. 4: 495–502.

Millar, A. H., Heazlewood, J. L., Kristensen, B. K., Braun, H.-P., and Møller, I. M. (2005) The plant mitochondrial proteome. Trends Plant Sci. 10: 36–43.

Millar, A. H., Whelan, J., Soole, K. L. and Day, D. A. (2011) Organization and regulation of mitochondrial respiration in plants. Annu. Rev. Plant Biol. 62: 79–104.

Møller, I. M. (2001) Plant mitochondria and oxidative stress: electron transport, NADPH turnover, and metabolism of reactive oxygen species. Annu. Rev. Plant Physiol. Plant Mol. Biol. 52: 561–591.

Moore, A. L., Shiba, T., Young, L., Harada, S., Kita, K. and Ito, K. (2013) Insights into the structure of the alternative oxidase. Annu. Rev. Plant Biol. 64: 637–663.

Nicholls, D. G., and Ferguson, S. J. (2013) Bioenergetics, 4th ed. Academic Press, San Diego, CA.

Noctor, G., De Paepe, R., and Foyer, C. H. (2007) Mitochondrial redox biology and homeostasis in plants. Trends Plant Sci. 12: 125–134.

Oliver, D. J., and McIntosh, C. A. (1995) The biochemistry of the mitochondrial matrix. In The Molecular Biology of Plant Mitochondria, C. S. Levings III and I. Vasil, eds., Kluwer, Dordrecht, Netherlands, pp. 237–280.

Palmieri, F., Pierri, C. L., De Grassi, A., Nunes-Nesi, A. and Fernie, A. R. (2011) Evolution, structure and function of mitochondrial carriers: a review with new insights. Plant J. 66: 161–181.

Raskin, I., Turner, I. M., and Melander, W. R. (1989) Regulation of heat production in the inflorescences of an Arum lily by endogenous salicylic acid. Proc. Natl. Acad. Sci. USA 86: 2214–2218.

Rasmusson, A. G., Geisler, D. A., and Møller, I. M. (2008) The multiplicity of dehydrogenases in the electron transport chain of plant mitochondria. Mitochondrion 8: 47–60.

Rasmusson, A. G., Soole, K. L., and Elthon, T. E. (2004) Alternative NAD(P)H dehydrogenases of plant mitochondria. Annu. Rev. Plant Biol. 55: 23–39.

Schwarzländer, M. and Finkemeier, I. (2013) Mitochondrial energy and redox signaling in plants. Antioxid. Redox Signal. 18: 2122–2144.

Sweetlove, L. J., Fait, A., Nunes-Nesi, A., Williams, T. and Fernie, A. R. (2007) The mitochondrion: an integration point of cellular metabolism and signalling. Crit. Rev. Plant Sci. 26: 17–43.

Vanlerberghe, G. C. (2013) Alternative oxidase: a mitochondrial respiratory pathway to maintain metabolic and signaling homeostasis during abiotic and biotic stress in plants. Int. J. Mol. Sci. 14: 6805–6847.

Vercesi, A. E., Martins I. S., Silva, M. P., and Leite, H. M. F. (1995) PUMPing plants. Nature 375: 24.

Respiration in Intact Plants and Tissues

Atkin, O. K., and Tjoelker, M. G. (2003) Thermal acclimation and the dynamic response of plant respiration to temperature. Trends Plant Sci. 8: 343–351.

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Gonzalez-Meler, M. A., Taneva, L., and Trueman, R. J. (2004) Plant respiration and elevated atmospheric CO₂ concentration: cellular responses and global significance. Ann. Bot. 94: 647–656.

Krömer, S. (1995) Respiration during photosynthesis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 46: 45–70.

Lambers, H. (1985) Respiration in intact plants and tissues: its regulation and dependence on environmental factors, metabolism and invaded organisms. In Higher Plant Cell Respiration (Encyclopedia of Plant Physiology, New Series, Vol. 18), R. Douce and D. A. Day, eds., Springer, Berlin, pp. 418–473.

Noctor, G., De Paepe, R., and Foyer, C. H. (2007) Mitochondrial redox biology and homeostasis in plants. Trends Plant Sci. 12: 125–134.

Thompson, P., Bowsher, C. G., and Tobin, A. K. (1998) Heterogeneity of mitochondrial protein biogenesis during primary leaf development in barley. Plant Physiol. 118: 1089–1099.

Tucker, G. A. (1993) Introduction. In Biochemistry of Fruit Ripening, G. Seymour, J. Taylor, and G. Tucker, eds., Chapman & Hall, London, pp. 1–51.

Lipid Metabolism

Browse, J. (2009) Jasmonate passes muster: a receptor and targets for the defense hormone. Annu. Rev. Plant Biol. 60: 183–205.

Chapman K. D., Dyer J. M., and Mullen R. T. (2012) Biogenesis and functions of lipid droplets in plants. J. Lipid Res. 53: 215–226.

Dahlqvist, A., Stahl, U., Lenman, M., Banas, A., Lee, M., Sandager, L., Ronne, H., and Stymne, S. (2000) Phospholipid:diacylglycerol acyltransferase: an enzyme that catalyzes the acyl-CoA-independent formation of triacylglycerol in yeast and plants. Proc. Natl. Acad. Sci. USA 97: 6487–6492.

Graham, I. A (2008) Seed storage oil mobilization. Annu. Rev. Plant Biol. 59: 115–42.

Iba, K. (2002) Acclimative response to temperature stress in higher plants: approaches of gene engineering for temperature tolerance. Annu. Rev. Plant Biol. 53: 225–245.

Markham J. E., Lynch D. V., Napier J. A., Dunn T. M., and Cahoon E. B. (2013) Plant sphingolipids: function follows form. Curr. Opin. Plant Biol. 16: 350–357.

Napier, J. A., Stobart, A. K., and Shewry, P. R. (1996) The structure and biogenesis of plant oil bodies: the role of the ER membrane and the oleosin class of proteins. Plant Mol. Biol. 31: 945–956.

Ohlrogge, J. B., and Browse, J. A. (1995) Lipid biosynthesis. Plant Cell 7: 957–970.

Ohlrogge, J. B., and Jaworski, J. G. (1997) Regulation of fatty acid synthesis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48: 109–136.

Sasaki, Y., Konishi, T., and Nagano, Y. (1995) The compartmentation of acetyl-coenzyme A carboxylase in plants. Plant Physiol. 108: 445–449.

Schroeder, J. I., Allen, G. J., Hugouvieux, V., Kwak, J. M., and Waner, D. (2001) Guard cell signal transduction. Annu. Rev. Plant Physiol. Plant Mol. Biol. 52: 627–658.

Wallis, J.G. and Browse, J. 2010 Lipid Biochemists Salute the Genome. Plant J. 61:1092-1106.

Wang, X. (2001) Plant phospholipases. Annu. Rev. Plant Physiol. Plant Mol. Biol. 52: 211–231.

Web Topics

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