.png){kind=icon}
Ahlgren, U., J. Jonsson and H. Edlund. 1996. The morphogenesis of the pancreatic mesenchyme is uncoupled from that of the pancreatic epithelium in IPF/PDX1-deficient mice. Development 122: 1409–1416.
Apelqvist, A., U. Ahlgren and H. Edlund. 1997. Sonic hedgehog directs specialised mesoderm differentiation in the intestine and pancreas. Curr. Biol. 7: 801–804.
Bayha, E., M. C. Jørgensen, P. Serup and A. Grapin-Botton. 2009. Retinoic acid signaling organizes endodermal organ specification along the entire antero-posterior axis. PLOS ONE 4: e5845.
Bossard, P. and K. S. Zaret. 2000. Repressive and restrictive mesodermal interactions with gut endoderm: Possible relation to Meckel's diverticulum. Development 127: 4915–4923.
Buczacki, S. J., H. I. Zecchini, A. M. Nicholson, R. Russell, L. Vermeulen, R. Kemp and D. J. Winton. 2013. Intestinal label-retaining cells are secretory precursors expressing Lgr5. Nature 495: 65–69.
Burlison, J. S., Q. Long, Y. Fujitani, C. V. Wright and M. A. Magnuson. 2008. Pdx-1 and Ptf1a concurrently determine fate specification of pancreatic multipotent progenitor cells. Dev. Biol. 316: 74–86.
Carlson, B. M. 1981. Patten’s Foundations of Embryology. McGraw-Hill, New York.
Clotman, F. P. Jacquemin, N. Plumb-Rudewiez, C. E. Pierreux, P. Van der Smissen, H. C. Dietz, P. J. Courtoy, G. G. Rousseau and F. P. Lemaigre. 2005. Control of liver cell fate decision by a gradient of TGF beta signaling modulated by Onecut transcription factors. Genes Dev. 19: 1849–1854.
Crump, J. G., L. Maves, N. D. Lawson, B. M. Weinstein and C. B. Kimmel. 2004. An essential role for Fgfs in endoderm pouch formation influences later craniofacial skeletal patterning. Development 131: 5703–5716.
DeLeve, L. D. 2013. Liver sinusoidal endothelial cells and liver regeneration. J. Clin. Invest. 123: 1861–1866.
Dhawan, S., S. Georgia, S. I. Tschen, G. Fan and A. Bhushan. 2011. Pancreatic β cell identity is maintained by DNA methylation-mediated repression of Arx. Dev. Cell 20: 419–429.
Ding, B. S. and 12 others. 2010. Inductive angiocrine signals from sinusoidal endothelium are required for liver regeneration. Nature 468: 310–315.
Dong, P. D., E. Provost, S. D. Leach and D. Y. Stainier. 2008. Graded levels of Ptf1a differentially regulate endocrine and exocrine fates in the developing pancreas. Genes Dev. 22: 1445–1450.
Dunn, N. R., S. D. Vincent, L. Oxburgh, E. J. Robertson and E. K. Bikoff. 2004. Combinatorial activities of Smad2 and Smad3 regulate mesoderm formation and patterning in the mouse embryo. Development 131: 1717–1728.
Fishman, M. P. and D. A. Melton. 2002. Pancreatic lineage analysis using a retroviral vector in embryonic mice demonstrates a common progenitor for endocrine and exocrine cells. Int. J. Dev. Biol. 46: 201–207.
Franklin, V., P. L. Khoo, H. Bildsoe, N. Wong, S. Lewis and P. P. Tam. 2008. Regionalisation of the endoderm progenitors and morphogenesis of the gut portals of the mouse embryo. Mech. Dev. 125: 587–600.
Fukumachi, H. and S. Takayama. 1980. Epithelial-mesenchymal interaction in differentiation of duodenal epithelium of fetal rats in organ culture. Experientia 36: 335–336.
Goldman, O., S. Han, W. Hamou, V. Jodon de Villeroche, G. Uzan, H. Lickert and V. Gouon-Evans. 2014. Endoderm generates endothelial cells during liver development. Stem Cell Rep. 3: 556–565.
Gordillo, M., T. Evans and V. Gouon-Evans. 2015. Orchestrating liver development. Development 142: 2094–2108.
Goss, A. M., Y. Tian, T. Tsukiyama, E. D. Cohen, D. Zhou, M. M. Lu, T. P. Yamaguchi and E. E. Morrisey. 2009. Wnt2/2b and b-catenin signaling are necessary and sufficient to specify lung progenitors in the foregut. Dev. Cell 17: 290–298.
Grapin-Botton, A., A. R. Majithia and D. A. Melton. 2001. Key events of pancreas formation are triggered in gut endoderm by ectopic expression of pancreatic regulatory genes. Genes Dev. 15: 444–454.
Gualdi, R., P. Bossard, M. Zheng, Y. Hamada, J. R. Coleman and K. S. Zaret. 1996. Hepatic specification of the gut endoderm in vitro: Cell signaling and transcriptional control. Genes Dev. 10: 1670–1682.
Gumpel-Pinot, M., S. Yasugi and T. Mizuno. 1978. Différenciation d’épithéliums endodermiques associaés au mésoderme splanchnique. Comp. Rend. Acad. Sci. 286: 117–120.
Harris-Johnson, K. S., E. T. Domyan, C. M. Vezina and X. Sun. 2009. b-Catenin promotes respiratory progenitor identity in mouse foregut. Proc. Natl. Acad. Sci. USA 106: 16287–16292.
Hebrok, M., S. Kim and D. A. Melton. 1998. Notochord repression of endodermal sonic hedgehog permits pancreas development. Genes Dev. 12: 1705–1713.
Henry, G. L. and D. A. Melton. 1998. Mixer, a homeobox gene required for endoderm development. Science 281: 91–96.
Hirai, H., T. Tani and N. Kikyo . 2010. Structure and functions of powerful transactivators: VP16, MyoD and FoxA. Int. J. Dev. Biol. 54: 1589–1596
Horb, M. E., C. N. Shen, D. Tosh and J. M. Slack. 2003. Experimental conversion of liver to pancreas. Curr. Biol. 13: 105–115.
Hu, J. and 12 others. 2014. Endothelial cell-derived angiopoietin-2 controls liver regeneration as a spatiotemporal rheostat. Science 343: 416–419.
Hudson, C., D. Clements, R. V. Friday, D. Stott and H. R. Woodland. 1997. Xsox17-a and -b mediate endoderm formation in Xenopus. Cell 91: 397–405.
Isaacson, D., J. Shen, D. McCreedy, M. Calvert, G. Cunha and L. Baskin. 2017. Dichotomous branching of human fetal lung demonstrated with light sheet fluorescence microscopy. Am. J. Respir. Crit. Care Med. 196: 1476–1477.
Jonnson, J., L. Carlsson, T. Edlund and H. Edlund. 1994. Insulin-promote-factor 1 is required for pancreas development in mice. Nature 371: 606–609.
Jung, J., M. Zheng, M. Goldfarb and K. S. Zaret. 1999. Initiation of mammalian liver development from endoderm by fibroblast growth factors. Science 284: 1998–2003.
Kanai-Azuma, M. and 10 others. 2002. Depletion of definitive gut endoderm in Sox17-null mutant mice. Development 129: 2367–2379.
Kedinger, M., P. M. Simon-Assman, F. Bouziges, C. Arnold, E. Alexandre and K. Haffen. 1990. Smooth muscle actin expression during rat gut development and induction in fetal skin fibroblastic cells associated with intestinal embryonic epithelium. Differentiation 43: 87–97.
Kim, B.-M., G. Buchner, I. Miletich, P. T. Sharpe and R. A. Shivdasani. 2005. The stomach mesenchymal transcription factor Barx1 specifies gastric epithelial identity through inhibition of transient Wnt signaling. Dev. Cell 8: 611–622.
Kim, H. Y., V. D. Varner and C. M. Nelson. 2013 Apical constriction initiates new bud formation during monopodial branching of the embryonic chicken lung. Development 140: 3146–3155.
Kim, H. Y., M. F. Pang, V. D. Varner, L. Kojima, E. Miller, D. C. Radisky and C. M. Nelson. 2015. Localized smooth muscle differentiation is essential for epithelial bifurcation during branching morphogenesis of the mammalian lung. Dev. Cell 34: 719–726.
Kwon, G. S., M. Viotti and A. K. Hadjantonakis. 2008. The endoderm of the mouse embryo arises by dynamic widespread intercalation of embryonic and extraembryonic lineages. Dev. Cell. 15: 509–520.
Lammert, E., O. Cleaver and D. A. Melton. 2001. Induction of pancreatic differentiation by signals from blood vessels. Science 294: 564–567.
Langman, J. 1981. Medical Embryology, 4th Ed. Williams & Wilkins, Baltimore, MD.
Lawson, K. A., J. J. Meneses and R. A. Pedersen. 1986. Cell fate and cell lineage in the endoderm of the presomite mouse embryo, studied with an intracellular tracer. Dev. Biol. 115: 325–339.
Le Douarin, N. 1975. An experimental analysis of liver development. Med. Biol. 53: 427–455.
Lee, C. D., J. R. Friedman, J. T. Fulmer and K. H. Kaestner. 2005. The initiation of liver development is dependent on Foxa transcription factors. Nature 435: 944–947.
Lorent, K. and 13 others. 2015. Identification of a plant isoflavonoid that causes biliary atresia. Sci. Transl. Med. 7: 286ra67.
Matsumoto, K., H. Yoshitomi, J. Rossant and K. S. Zaret. 2001. Liver organogenesis promoted by endothelial cells prior to vascular function. Science 294: 559–563.
McLin, V. A., S. A. Rankin and A. M. Zorn. 2007. Repression of Wnt/b-catenin signaling in the anterior endoderm is essential for liver and pancreas development. Development 134: 2207–2217.
Metzger, R. J., O. D. Klein, G. R. Martin and M. A. Krasnow. 2008. The branching programme of mouse lung development. Nature 453: 745–750.
Montalbano, A. P., S. Hawgood and C. R. Mendelson. 2013. Mice deficient in surfactant protein A (SP-A) and SP-D or in TLR2 manifest delayed parturition and decreased expression of inflammatory and contractile genes. Endocrinology 154: 483–498.
Moore-Scott, B. A. and N. R. Manley. 2005. Differential expression of sonic hedgehog along the anterior-posterior axis regulates patterning of pharyngeal pouch endoderm and pharyngeal endoderm-derived organs. Dev. Biol. 278: 323–335.
Ober, E. A., H. Verkade, H. A. Field and D. Y. Stainier. 2006. Mesodermal Wnt2b signalling positively regulates liver specification. Nature 442: 688–691.
Odom, D. T. and 12 others. 2004. Control of pancreas and liver gene expression by HNF transcription factors. Science 303: 1378–1381.
Offield, M. F., T. L. Jetton, P. A. Labosky, M. Ray, R. W. Stein, M. A. Magnuson, B. L. Hogan and C. V. Wright. 1996. PDX-1 is required for pancreatic outgrowth and differentiation of the rostral duodenum. Development 122: 983–995.
Okada, T. S. 1960. Epithelio-mesenchymal interactions in the regional differentiation of the digestive tract in the amphibian embryo. Roux Arch. Entwick. Mech. 152: 1–21.
Pagliuca, F. W., J. R. Millman, M. Gürtler, M. Segel, A. Van Dervort, J. H. Ryu, Q. P. Peterson, D. Greiner and D. A. Melton. 2014. Generation of functional human pancreatic beta cells in vitro. Cell 159: 428–439.
Pardo-Saganta, A., P. R. Tata, B. M. Law, B. Saez, R. D. Chow, M. Prabhu, T. Gridley and J. Rajagopal. 2015. Parent stem cells can serve as niches for their daughter cells. Nature 523: 597–601.
Parviz, F., C. Matullo, W. D. Garrison, L. Savatski, J. W. Adamson, G. Ning, K. H. Kaestner, J. M. Rossi, K. S. Zaret and S. A. Duncan. 2003. Hepatocyte nuclear factor 4a controls the development of the hepatic diverticulum and liver morphogenesis. Nat. Genet. 34: 292–296.
Rezania, A. and 12 others. 2014. Reversal of diabetes with insulin-producing cells derived in vitro from human pluripotent stem cells. Nat. Biotechnol. 32: 1121–1133.
Roberts, D. J., R. L. Johnson, A. C. Burke, C. E. Nelson, B. A. Morgan and C. Tabin. 1995. Sonic hedgehog is an endodermal signal inducing Bmp-4 and Hox genes during induction and regionalization of the chick hindgut. Development 121: 3163–3174.
Roberts, D. J., D. M. Smith, D. J. Goff and C. J. Tabin. 1998. Epithelial-mesenchymal signaling during the regionalization of the chick gut. Development 125: 2791–2801.
Rothova, M., M. Thompson, H. Lickert and A. S. Tucker. 2012. Lineage tracing of the endoderm during oral development. Dev. Dyn. 241:1183–1191.
Sadler, T. W. 2009. Langman’s Medical Embryology. Lippincott, Williams & Wilkins, Hagerstown, MD.
Savin, T., N. A. Kurpios, A. E. Shyer, P. Florescu, H. Liang, L. Mahadevan and C. J. Tabin. 2011. On the growth and form of the gut. Nature 476: 57–62.
Schmidt, C., F. Bladt, S. Goedecke, V. Brinkmann, W. Zschiesche, M. Sharpe, E. Gherardi and C. Birchmeier. 1995. Scatter factor/hepatocyte growth factor is essential for liver development. Nature 373: 699–702.
Shannon, J. M., L. D. Nielsen, S. A. Gebb and S. H. Randell. 1998. Mesenchyme specifies epithelial differentiation in reciprocal recombinants of embryonic lung and trachea. Dev. Dyn. 212: 482–494.
Sherwood, R. I., R. Maehr, E. O. Mazzoni and D. A. Melton. 2011. Wnt signaling specifies and patterns intestinal endoderm. Mech. Dev. 128: 387–400.
Shyer, A. E., T. Tallinen, N. L. Nerurkar, Z. Wei, E. S. Gil, D. L. Kaplan, C. J. Tabin and L. Mahadevan. 2013. Villification: How the gut gets its villi. Science 342: 212–218.
Shyer, A. E., T. R. Huycke, C. Lee, L. Mahadevan and C. J. Tabin. 2015. Bending gradients: How the intestinal stem cell gets its home. Cell 161: 569–580.
Spurlin, J. W. and C. M. Nelson. 2017. Building branched tissue structures: From single cell guidance to coordinated construction. Philos. Trans. R. Soc. London 372B: 20150527.
Stange, D. E. and 14 others. 2013. Differentiated Troy+ chief cells act as reserve stem cells to generate all lineages of the stomach epithelium. Cell 155: 357–368.
Stringer, E. J. and 13 others. 2012. Cdx2 determines the fate of postnatal intestinal endoderm. Development 139: 465–474.
Takayama, K., M. Inamura, K. Kawabata, K. Tashiro, K. Katayama, F. Sakurai, T. Hayakawa, M. K. Furue and H. Mizuguchi. 2011. Efficient and directive generation of two distinct endoderm lineages from human ESCs and iPSCs by differentiation stage-specific SOX17 transduction. PLOS ONE 6: e21780.
Tata, P. R. and 11 others. 2013. Dedifferentiation of committed epithelial cells into stem cells in vivo. Nature 503: 218–223.
Theodosiou, A. and C. J. Tabin. 2005. Sox9 and Nkx2.5 determine the pyloric sphincter epithelium under the control of BMP signaling. Dev. Biol. 279: 481–490.
Tremblay, K. D. and K. S. Zaret. 2005. Distinct populations of endoderm cells converge to generate the embryonic liver bud and ventral foregut tissues. Dev. Biol. 280: 87–99.
Uemura, M., H. Igarashi, A. Ozawa, N. Tsunekawa, M. Kurohmaru, M. Kanai-Azuma and Y. Kanai. 2015. Fate mapping of gallbladder progenitors in posteroventral foregut endoderm of mouse early somite-stage embryos. J. Vet. Med. Sci. 77: 587–591.
Vincent, S. D., N. R. Dunn, S. Hayashi, D. P. Norris and E. J. Robertson. 2003. Cell fate decisions within the mouse organizer are governed by graded Nodal signals. Genes Dev. 17: 1646–1662.
Viotti, M., A. C. Foley and A. K. Hadjantonakis. 2014a. Gutsy moves in mice: Cellular and molecular dynamics of endoderm morphogenesis. Philos. Trans. R. Soc. London 369B: 20130547.
Viotti, M., S. Nowotschin and A. K. Hadjantonakis. 2014b. SOX17 links gut endoderm morphogenesis and germ layer segregation. Nat. Cell Biol. 16: 1146–1156.
Wallace, K. N. and M. Pack. 2003. Unique and conserved aspects of gut development in zebrafish. Dev. Biol. 255: 12–29.
Wessells, N. K. 1970. Mammalian lung development: Interactions in formulation and morphogenesis of tracheal buds. J. Exp. Zool. 175: 455–466.
Woo, J., I. Miletich, B.-M. Kim, P. T. Sharpe and R. A. Shivdasani. 2011. Barx1-mediated inhibition of Wnt signaling in the mouse thoracic foregut controls tracheo-esophageal septation and epithelial differentiation. PLOS ONE 6: e22493.
Xu, C. R., P. A. Cole, D. J. Meyers, J. Kormish, S. Dent and K. S. Zaret. 2011. Chromatin “prepattern” and histone modifiers in a fate choice for liver and pancreas. Science 332: 963–966.
Yokouchi, Y., J. Sakiyama and A. Kuroiwa. 1995. Coordinate expression of Abd-B subfamily genes of the HoxA cluster in developing digestive tract of the chick embryo. Dev. Biol. 169: 76–89.
Yoshitomi, H. and K. S. Zaret. 2004. Endothelial cell interactions initiate dorsal pancreas development by selectively inducing transcription factor Ptf1a. Development 131: 807–814.
Zaret, K. S. 2016. From endoderm to liver bud: Paradigms of cell type specification and tissue morphogenesis. Curr. Top. Dev. Biol. 117: 647–669.
Zhang, W., T. A. Yatskievych, R. K. Baker and P. B. Antin. 2004. Regulation of Hex gene expression and initial stages of avian hepatogenesis by BMP and FGF signaling. Dev. Biol. 268: 312–326.
Zhou, Q., A. C. Law, J. Rajagopal, W. J. Anderson, P. A. Gray and D. A. Melton. 2007. A multipotent progenitor domain guides pancreatic organogenesis. Dev. Cell 13: 103–114.
Zhou, Y. and 12 others. 2011. Latent TGF-b binding protein 3 identifies a second heart field in zebrafish. Nature 474: 645–648.