Specifying Identity: Mechanisms of Developmental Patterning

Briggs, J. A., C. Weinreb, D. E. Wagner, S. Megason, L. Peshkin, M. W. Kirschner and A. M. Klein. 2018. The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution. Science 360: eaar5780.

PubMed Link

Conklin, E. G. 1905. The organization and cell lineage of the ascidian egg. J. Acad. Nat. Sci. Phila. 13: 1–119.

Driesch, H. 1892. The potency of the first two cleavage cells in echinoderm development: Experimental production of partial and double formations. In B. H. Willier and J. M. Oppenheimer (eds.), Foundations of Experimental Embryology. Hafner, New York 1974.

Driesch, H. 1893. Zur Verlagerung der Blastomeren des Echinideneies. Anat. Anz. 8: 348–357.

Farrell, J. A., Y. Wang, S. J. Riesenfeld, K. Shekhar, A. Regev and A. F. Schier. 2018. Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis. Science 360: eaar3131.

PubMed Link

Gregor, T., D. W. Tank, E. F. Wieschaus and W. Bialek. 2007. Probing the limits to positional information. Cell 130: 153–164.

PubMed Link

Hamburger, V. 1997. Wilhelm Roux: Visionary with a blind spot. J. Hist. Biol. 30: 229–238.

PubMed Link

Harland, R. M. 2018. A new view of embryo development and regeneration. Science 360: 967–968.

PubMed Link

Harrison, R. G. 1933. Some difficulties of the determination problem. Am. Nat. 67: 306–321.

Huxley, J. and G. R. de Beer. 1934. The Elements of Experimental Embryology. Cambridge University Press, Cambridge.

Kanesaki, T., C. M. Edwards, U. S. Schwarz and J. Grosshans. 2011. Dynamic ordering of nuclei in syncytial embryos: A quantitative analysis of the role of cytoskeletal networks. Integr. Biol. 3: 1112–1119.

PubMed Link

Kimata, Y., T. Higaki, T. Kawashima, D. Kurihara, Y. Satof, T. Yamada, S. Hasezawa, F. Berger, T. Higashiyama and M. Ueda. 2016. Cytoskeleton dynamics control the first asymmetric cell division in Arabidopsis zygote. Proc. Nat. Acad. Sci. USA 113: 14157–14162.

Kimelman, D. and B. L. Martin. 2012. Anterior-posterior patterning in early development: Three strategies. Wiley Interdiscip. Rev. Dev. Biol. 1: 253–266.

PubMed Link

Klein, S. L. and S. A. Moody. 2016. When family history matters: The importance of lineage analyses and fate maps for explaining animal development. Curr. Top. Dev. Biol. 117: 93–112.

PubMed Link

Koke, C., T. Kanesaki, J. Grosshans, U. S. Schwarz and C. M. Dunlop. 2014. A computational model of nuclear self-organisation in syncytial embryos. J. Theor. Biol. 21: 92–100.

PubMed Link

Livet, J., T. A. Weissman, H. Kang, R. W. Draft, J. Lu, R. A. Bennis, J. R. Sanes and J. W. Lichtman. 2007. Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system. Nature 450: 56–62.

PubMed Link

Little, S. C., G. Tkačik, T. B. Kneeland, E. F. Wieschaus and T. Gregor. 2011. The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized mRNA. PLOS Biol. 9: e1000596.

PubMed Link

Marcus, N. H. 1979. Developmental aberrations associated with twinning in laboratory-reared sea urchins. Dev. Biol. 70: 274–277.

PubMed Link

Nishida, H. 1987. Cell lineage analysis in ascidian embryos by intracellular injection of a tracer enzyme. III. Up to the tissue-restricted stage. Dev. Biol. 121: 526–541.

PubMed Link

Nishida, H. and K. Sawada. 2001. Macho-1 encodes a localized mRNA in ascidian eggs that specifies muscle fate during embryogenesis. Nature 409: 724–729.

PubMed Link

Nüsslein-Volhard, C., H. G. Fröhnhofer and R. Lehmann. 1987. Determination of anterioposterior polarity in DrosophilaScience 238: 1675–1681.

PubMed Link

Pan, Y. A., T. Freundlich, T. A. Weissman, D. Schoppik, X. C. Wang, S. Zimmerman, B. Ciruna, J. R. Sanes, J. W. Lichtman and A. F. Schier. 2013. Zebrabow: Multispectral cell labeling for cell tracing and lineage analysis in zebrafish. Development 140: 2835–2846.

PubMed Link

Pillitteri, L. J., X. Guo and J. Dong. 2016. Asymmetric cell division in plants: mechanisms of symmetry breaking and cell fate determination. Cell Mol. Life Sci. 73: 4213–4229.

PubMed Link

Pourquié, O. 2001. A macho way to make muscles. Nature 409: 679–680.

PubMed Link

Qu, L. H., X. Zhou, X. Li, S. S. Li, J. Zhao, P. Zhao, Y. Liu and M. X. Sun. 2017. The autonomous cell fate specification of basal cell lineage: The initial round of cell fate specification occurs at the two-celled proembryo stage. Plant J. 91: 1051–1063.

PubMed Link

Reverberi, G. and A. Minganti. 1946. Fenomeni di evocazione nello sviluppo dell’uovo di Ascidie. Risultati dell’indagine spermentale sull’ouvo di Ascidiella aspersa e di Ascidia malaca allo stadio di 8 blastomeri. Pubbl. Staz. Zool. Napoli 20: 199–252.

PubMed Link

Sample, C. and S. Y. Shvartsman. 2010. Multiscale modeling of diffusion in the early Drosophila embryo. Proc. Natl. Acad. Sci. USA 107: 10092–10096.

PubMed Link

Slack, J. M. W. 1991. From Egg to Embryo: Regional Specification in Early Development. Cambridge University Press, New York.

Sulston, J. E. and H. R. Horvitz. 1977. Post-embryonic cell lineages of the nematode, Caenorhabditis elegans. Dev. Biol. 56: 110–156.

 PubMed Link

Tabansky, I. and 11 others. 2013. Developmental bias in cleavage-stage mouse blastomeres. Curr. Biol. 23: 21–31.

PubMed Link

Tomer, R., K. Khairy, F. Amat and P. J. Keller. 2012. Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy. Nat. Methods 9: 755–763.

PubMed Link

Veeman, M. and W. Reeves. 2015. Quantitative and in toto imaging in ascidians: Working toward an image-centric systems biology of chordate morphogenesis. Genesis 53: 143–159.

PubMed Link

Wagner, D. E., C. Weinreb, Z. M. Collins, J. A. Briggs, S. G. Megason and A. M. Klein. 2018. Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo. Science 360: 981–987.

PubMed Link

Weismann, A. 1893. The Germ-Plasm: A Theory of Heredity. W. Newton Parker and H. Ronnfeld (Trans.). Walter Scott Ltd., London.

Weissman, T. A. and Y. A. Pan. 2015. Brainbow: New resources and emerging biological applications for multicolor genetic labeling and analysis. Genetics 199: 293–306.

PubMed Link

Whittaker, J. R. 1973. Segregation during ascidian embryogenesis of egg cytoplasmic information for tissue-specific enzyme development. Proc. Natl. Acad. Sci. USA 70: 2096–2100.

PubMed Link

Whittaker, J. R. 1982. Muscle lineage cytoplasm can change the developmental expression in epidermal lineage cells of ascidian embryos. Dev. Biol. 93: 463–470.

PubMed Link

Wilson, E. B. 1894. The mosaic theory of development. Biol. Lect. Woods Hole 2: 1–14.

Wilson, E. B. 1904. Experimental studies on germinal location. J. Exp. Zool. 1: 1–72.